{ "_id": "6a1f23f2b401979e73420c4e", "Package": "KarsTS", "Type": "Package", "Title": "An Interface for Microclimate Time Series Analysis", "Version": "2.4.1", "Date": "2021-01-13", "Authors@R": "c(person(\"Marina\", \"Saez\", email = \"marinasaez_andreu@hotmail.com\",role = c(\"aut\", \"cre\")),person(\"David\", \"Benavente\", role = c(\"ths\")),person(\"Soledad\", \"Cuezva\", role = c(\"ths\")),person(\"Concepcion\", \"Pla\", role = c(\"ctb\")))", "Author": "Marina Saez [aut, cre], David Benavente [ths], Soledad Cuezva\n[ths], Concepcion Pla [ctb]", "Maintainer": "Marina Saez ", "Description": "An R code with a GUI for microclimate time series, with an\nemphasis on underground environments. 'KarsTS' provides linear\nand nonlinear methods, including recurrence analysis (Marwan et\nal. (2007) ) and filling\nmethods (Moffat et al. (2007)\n), as well as tools to\nmanipulate easily time series and gap sets.", "License": "GPL (>= 2)", "Note": "Please, cite this package as: Marina Saez (2021). KarsTS: An\nInterface For Microclimate Time Series Analysis. R package\nversion 2.4.1.", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 06:47:54 UTC", "User": "root" }, "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\nlibgsl0-dev texlive libicu-dev libpng-dev libuv1-dev\nlibgl1-mesa-dev libssl-dev tcl tk tk-dev tk-table libx11-dev\nzlib1g-dev", "Repository": "https://marinasams.r-universe.dev", "Date/Publication": "2021-01-14 19:50:05 UTC", "RemoteUrl": "https://github.com/cran/KarsTS", "RemoteRef": "HEAD", "RemoteSha": "a61bf7a479a7eeba1d2af68ff0fab8041b3d3fe2", "MD5sum": "68f949fa4f5afd07655a031d63b4639a", "_user": "marinasams", "_type": "src", "_file": "KarsTS_2.4.1.tar.gz", "_fileid": "6854c254ffe993799bf10eb522d86d671d4486ff693cbd5c34c10d665fd201b6", "_filesize": 2410699, "_sha256": "6854c254ffe993799bf10eb522d86d671d4486ff693cbd5c34c10d665fd201b6", "_created": "2026-05-16T06:47:54.000Z", "_published": "2026-06-02T18:41:54.250Z", "_distro": "noble", "_jobs": [ { "job": 79145652678, "time": 224, "config": 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"extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/KarsTS.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "marinasams", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2017-05-27" }, { "version": "1.1", "date": "2017-06-02" }, { "version": "2.0", "date": "2018-01-31" }, { "version": "2.1", "date": "2018-04-05" }, { "version": "2.2", "date": "2018-11-04" }, { "version": "2.3", "date": "2020-06-07" }, { "version": "2.4", "date": "2020-12-15" }, { "version": "2.4.1", "date": "2021-01-14" } ], "_exports": [ "aboutKTS", "aggregateKTS", "anaSamPer", "applyGap2TSer", "applyTheiler", "are2TsTimeCompatible", "areTsGapTimeCompatible", "areTsRmTimeCompatible", "arimaKalman", "arimaXKalman", "assignMultiple", "buttons1", "buttons2", "buttons3", "buttons4", "buttons5", "checkIfAny", "checkIfAnyGapOrTs", "checkIfAnyGapTs", "checkIfAnyRm", "checkIfAnyRmTs", "checkIfAnyTs", "cleanEnvir", "compareVecVec", "composeKTS", "createChb", "createChbChb", "createChbEntry", "createCrossRM", "createCrossRMPlot", "createDistMatrix", "createEachRb", "createEntry", "createFAN", "createFANplot", "createGapChb", "createGapRb", "createJointRM", "createNote", "createOK", "createRandGaps", "createRandName", "createRb", "createRmChb", "createRmRb", "createSimpleRM", "createSimpleRMPlot", "createSpecGaps", "createSubPanR4C1", "createTitle", "createTITLE", "createTsChb", "createTsRb", "cumuKTS", "destroyMainScreen", "destroyWelcome", "determinismKTS", "diffKTS", "E1dAndE2d", "embedData", "endingLines", "exportall", "fillWithTwins", "findDateFormat", "findTwins", "fnnKTS", "functToExport", "gamKTS", "gapCheckedTF", "gapDetect", "gapForSelMethod", "genGapExample", "genRmExample", "genTSExample", "getClassEnvir", "getCoordsKTS", "getCRP", "getDelayCharTimes", "getFANRM2", "getGapsAfterFill", "getMaxNegSlope", "getMaxPosSlope", "getNAsGaps", "getNewGapsInd", "getOtherErrEstim", "getProTaos", "getRecurrencePoints", "getRollStatistics", "getSamPerTable", "getSamPerTable.1Freq", "getScreenSize", "getStatistics", "getUniqueSampPer", "goodnessFilling", "groupDates", "groupIndices", "histKTS", "invariantsKTS", "isTimeAlright", "KarsTS", "laminarityKTS", "linCorrKTS", "linearityKTS", "loadAllTypes", "loadKarsTSFonts", "loessKTS", "mainScreen", "meanValue", "mergeTsOrGap", "missForestKTS", "modeKTS", "mutInf", "mutualKTS", "myApplyVector", "myLinModel", "myScale", "naApproxKTS", "NAs4Resamp", "naSplinesKTS", "normalityKTS", "packagesToImport", "pcaKTS", "plotTimeSeries", "readMultEntryvalues", "refreshDataSetsList", "removeAllTypes", "removeIfExists", "removePoints", "renameAllTypes", "rmCheckedTF", "rmDetect", "rmSlopeOutliers", "rollStatisticsKTS", "roundKTS", "RPKTS", "saveAllTypes", "saveReport", "scaleKTS", "scattTimeSeries", "selectionGaps", "selectionTS", "separateEntry", "setCorrectDate", "setwdKTS", "showHelp", "slopeOutliersBut", "stationarityKTS", "statisticsKTS", "stinemannKTS", "stlplusKTS", "theilerKTS", "tsCheckedTF", "tsDetect", "verifyCharEntry", "verifyDateEntry", "verifyIntEntry", "verifyRealEntry", "welcomeScreen", "windRoseKTS", "writeMethodSummary", "writeMethodTitle" ], "_help": [ { "page": "KarsTS-package", "title": "An Interface for Microclimate Time Series Analysis", "topics": [ "KarsTS-package" ] }, { "page": "aboutKTS", "title": "aboutKTS: opens information file about KarsTS version", "topics": [ "aboutKTS" ] }, { "page": "aggregateKTS", "title": "aggregateKTS: creation of time series of aggregated values", "topics": [ "aggregateKTS" ] }, { "page": "anaSamPer", "title": "anaSamper: analyzing sampling periods and gaps", "topics": [ "anaSamPer" ] }, { "page": "applyGap2TSer", "title": "applyGap2TSer: apply a gap set to a time series", "topics": [ "applyGap2TSer" ] }, { "page": "applyTheiler", "title": "applyTheiler: apply Theiler's window", "topics": [ "applyTheiler" ] }, { "page": "are2TsTimeCompatible", "title": "are2TsTimeCompatible: test time compatibility between two time series", "topics": [ "are2TsTimeCompatible" ] }, { "page": "areTsGapTimeCompatible", "title": "areTsGapTimeCompatible: tests time compatibility between a time series and a gap set", "topics": [ "areTsGapTimeCompatible" ] }, { "page": "areTsRmTimeCompatible", "title": "areTsRmTimeCompatible: test time compatibility between a time series and a recurrence matrix", "topics": [ "areTsRmTimeCompatible" ] }, { "page": "arimaKalman", "title": "arimaKalman: ARIMA + Kalman smoother", "topics": [ "arimaKalman" ] }, { "page": "arimaXKalman", "title": "arimaXKalman: ARIMAX + Kalman smoother", "topics": [ "arimaXKalman" ] }, { "page": "assignMultiple", "title": "assignMultiple: assign multiple", "topics": [ "assignMultiple" ] }, { "page": "buttons1", "title": "buttons1: create the buttons corresponding to the Time Series Menu", "topics": [ "buttons1" ] }, { "page": "buttons2", "title": "buttons2: create the buttons corresponding to the Gap Sets Menu", "topics": [ "buttons2" ] }, { "page": "buttons3", "title": "buttons3: create the buttons corresponding to the Analysis Menu", "topics": [ "buttons3" ] }, { "page": "buttons4", "title": "buttons4: create the buttons corresponding to the Plots Menu", "topics": [ "buttons4" ] }, { "page": "buttons5", "title": "buttons5: create the buttons corresponding to the Filling Menu", "topics": [ "buttons5" ] }, { "page": "checkIfAny", "title": "checkIfAny: check if there are any data sets in the environment", "topics": [ "checkIfAny" ] }, { "page": "checkIfAnyGapOrTs", "title": "checkIfAny: check if there are any time series or gap sets in the environment", "topics": [ "checkIfAnyGapOrTs" ] }, { "page": "checkIfAnyGapTs", "title": "checkIfAny: check if there are any time series and gap sets in the environment", "topics": [ "checkIfAnyGapTs" ] }, { "page": "checkIfAnyRm", "title": "checkIfAny: check if there is some recurrence matrix in the environment", "topics": [ "checkIfAnyRm" ] }, { "page": "checkIfAnyRmTs", "title": "checkIfAnyRmTs: check if there is some recurrence matrix and some time series in the environment", "topics": [ "checkIfAnyRmTs" ] }, { "page": "checkIfAnyTs", "title": "checkIfAnyTs: check if there is some time series in the environment", "topics": [ "checkIfAnyTs" ] }, { "page": "cleanEnvir", "title": "cleanEnvir: removes a list of variables from KTSEnv", "topics": [ "cleanEnvir" ] }, { "page": "compareVecVec", "title": "compareVecVec: compare the elements of two vectors", "topics": [ "compareVecVec" ] }, { "page": "composeKTS", "title": "composeKTS: perform operations on time series", "topics": [ "composeKTS" ] }, { "page": "createChb", "title": "createChb: creates a check box on the main screen", "topics": [ "createChb" ] }, { "page": "createChbChb", "title": "createChbChb: two column check box", "topics": [ "createChbChb" ] }, { "page": "createChbEntry", "title": "createChbEntry: creates a check box with associated text entries", "topics": [ "createChbEntry" ] }, { "page": "createCrossRM", "title": "createCrossRM: creates a cross recurrence matrix", "topics": [ "createCrossRM" ] }, { "page": "createCrossRMPlot", "title": "createCrossRMPlot: creates a cross recurrence plot", "topics": [ "createCrossRMPlot" ] }, { "page": "createDistMatrix", "title": "createDistMatrix: creates distance matrix", "topics": [ "createDistMatrix" ] }, { "page": "createEachRb", "title": "createEachRb: creates a radiobutton on the main screen", "topics": [ "createEachRb" ] }, { "page": "createEntry", "title": "createChb: creates a text entry on the main screen", "topics": [ "createEntry" ] }, { "page": "createFAN", "title": "createFAN: creates a fixed amount of neighbors (FAN) matrix.", "topics": [ "createFAN" ] }, { "page": "createFANplot", "title": "createFANplot: creates a plot from a fixed amount of neighbors (FAN) recurrence matrix", "topics": [ "createFANplot" ] }, { "page": "createGapChb", "title": "createGapChb: creates a check box of gap sets", "topics": [ "createGapChb" ] }, { "page": "createGapRb", "title": "createGapRb: creates a radio button of gap sets", "topics": [ "createGapRb" ] }, { "page": "createJointRM", "title": "createJointRM: creates a joint recurrence matrix", "topics": [ "createJointRM" ] }, { "page": "createJointRMPlot", "title": "createJointRMPlot: creates a cross recurrence plot", "topics": [ "createJointRMPlot" ] }, { "page": "createNote", "title": "createNote: creates a note on the input panel", "topics": [ "createNote" ] }, { "page": "createOK", "title": "createOK: creates the OK or NEXT button on the input panel", "topics": [ "createOK" ] }, { "page": "createRandGaps", "title": "createRandGaps: create random gaps in a time series", "topics": [ "createRandGaps" ] }, { "page": "createRandName", "title": "createRandName: creates a random name", "topics": [ "createRandName" ] }, { "page": "createRb", "title": "createRb: creates a radio button", "topics": [ "createRb" ] }, { "page": "createRmChb", "title": "createRmChb: creates a check box of recurrence matrices", "topics": [ "createRmChb" ] }, { "page": "createRmRb", "title": "createRmRb: creates a radiobutton of recurrence matrices", "topics": [ "createRmRb" ] }, { "page": "createSimpleRM", "title": "createSimpleRM: creates a recurrence matrix", "topics": [ "createSimpleRM" ] }, { "page": "createSimpleRMPlot", "title": "createSimpleRMPlot: creates a recurrence plot", "topics": [ "createSimpleRMPlot" ] }, { "page": "createSpecGaps", "title": "createSpecGaps: creates a specific gap in a time series", "topics": [ "createSpecGaps" ] }, { "page": "createSubPanR4C1", "title": "createSubPanR4C1: creates the input panel on the main screen", "topics": [ "createSubPanR4C1" ] }, { "page": "createTitle", "title": "createTitle: creates a title in the input panel", "topics": [ "createTitle" ] }, { "page": "createtitle_1", "title": "createTITLE: create a title on the input panel", "topics": [ "createTITLE" ] }, { "page": "createTsChb", "title": "createTsChb: creates a check box of time series", "topics": [ "createTsChb" ] }, { "page": "createTsRb", "title": "createTsRb: creates a radiobutton of time series", "topics": [ "createTsRb" ] }, { "page": "cumuKTS", "title": "cumuKTS: creates a cumulated time series", "topics": [ "cumuKTS" ] }, { "page": "destroyMainScreen", "title": "A function to destroy KarsTS main screen", "topics": [ "destroyMainScreen" ] }, { "page": "destroyWelcome", "title": "destroyWelcome: destroys KarsTS welcome screen", "topics": [ "destroyWelcome" ] }, { "page": "determinismKTS", "title": "determinismKTS: estimate determinism", "topics": [ "determinismKTS" ] }, { "page": "diffKTS", "title": "diffKTS: calculate differences of a time series", "topics": [ "diffKTS" ] }, { "page": "E1dAndE2d", "title": "E1dAndE2d: invariants E1(d) and E2(d)", "topics": [ "E1dAndE2d" ] }, { "page": "embedData", "title": "embedData: embeds a time series", "topics": [ "embedData" ] }, { "page": "endingLines", "title": "endingLines: add three lines of asterisks on the output panel", "topics": [ "endingLines" ] }, { "page": "exportall", "title": "exportall: exports all types of data sets", "topics": [ "exportall" ] }, { "page": "fillWithTwins", "title": "fillWithTwins: fills missing values using twin points", "topics": [ "fillWithTwins" ] }, { "page": "findDateFormat", "title": "findDateFormat: finds the format of a set of dates", "topics": [ "findDateFormat" ] }, { "page": "findTwins", "title": "findTwins: finds twin points in a recurrence matrix", "topics": [ "findTwins" ] }, { "page": "fnnKTS", "title": "fnn: plots embedding dimendion vs false nearest neighbors", "topics": [ "fnnKTS" ] }, { "page": "functToExport", "title": "functToExport: functions to export", "topics": [ "functToExport", "KTSEnv", "makeGlobal" ] }, { "page": "gamKTS", "title": "A function to fill values by means of a generalized additive model", "topics": [ "gamKTS" ] }, { "page": "gapCheckedTF", "title": "gapCheckedTF: identifies checked gap sets", "topics": [ "gapCheckedTF" ] }, { "page": "gapDetect", "title": "gapDetect: identifies the gap sets currently loaded", "topics": [ "gapDetect" ] }, { "page": "gapForSelMethod", "title": "gapForSelMethod: gap set to fill", "topics": [ "gapForSelMethod" ] }, { "page": "genGapExample", "title": "A function to generate a gap set example", "topics": [ "genGapExample" ] }, { "page": "genRmExample", "title": "A function to generate a recurrence matrix example", "topics": [ "genRmExample" ] }, { "page": "genTSExample", "title": "A function to generate an example time series", "topics": [ "genTSExample" ] }, { "page": "getClassEnvir", "title": "getClassEnvir: get objects of a class from an environment", "topics": [ "getClassEnvir" ] }, { "page": "getCoordsKTS", "title": "getCoordsKTS: get coordinates from a plot", "topics": [ "getCoordsKTS" ] }, { "page": "getCRP", "title": "getCRP: gets the correlation probability of recurrence", "topics": [ "getCRP" ] }, { "page": "getDelayCharTimes", "title": "getDelayCharTimes: transforms dates from character to numeric.", "topics": [ "getDelayCharTimes" ] }, { "page": "getFANRM2", "title": "getFANRM2: creates a fixed amount of neighbours (FAN) matrix via console.", "topics": [ "getFANRM2" ] }, { "page": "getGapsAfterFill", "title": "getGapsAfterFill: get the remaining gaps", "topics": [ "getGapsAfterFill" ] }, { "page": "getMaxNegSlope", "title": "getMaxNegSlope: get the maximum negative slope", "topics": [ "getMaxNegSlope" ] }, { "page": "getMaxPosSlope", "title": "getMaxPosSlope: get the maximum negative slope", "topics": [ "getMaxPosSlope" ] }, { "page": "getNAsGaps", "title": "getNAsGaps: get the gaps in a time series", "topics": [ "getNAsGaps" ] }, { "page": "getNewGapsInd", "title": "A function to create random gaps", "topics": [ "getNewGapsInd" ] }, { "page": "getOtherErrEstim", "title": "getOtherErrEstim: get some error estimates from a linear fit", "topics": [ "getOtherErrEstim" ] }, { "page": "getProTaos", "title": "getProTaos:calculate the probability of recurrence", "topics": [ "getProTaos" ] }, { "page": "getRecurrencePoints", "title": "A function to get recurrent points in a time series", "topics": [ "getRecurrencePoints" ] }, { "page": "getRollStatistics", "title": "getRollStatistics: get rolling statistics It is used internally", "topics": [ "getRollStatistics" ] }, { "page": "getSamPerTable", "title": "getSamPerTable: get sampling periods table", "topics": [ "getSamPerTable" ] }, { "page": "getSamPerTable.1Freq", "title": "getSamPerTable.1Freq: get sampling periods table (time series with one frequency)", "topics": [ "getSamPerTable.1Freq" ] }, { "page": "getScreenSize", "title": "getScreenSize: gets the computer screen size", "topics": [ "getScreenSize" ] }, { "page": "getStatistics", "title": "getStatistics: calculates the statistics of a time series", "topics": [ "getStatistics" ] }, { "page": "getUniqueSampPer", "title": "getUniqueSampPer: get unique sampling periods", "topics": [ "getUniqueSampPer" ] }, { "page": "goodnessFilling", "title": "goodnessFilling: estimate the goodness of the filling", "topics": [ "goodnessFilling" ] }, { "page": "groupDates", "title": "groupDates: groups dates", "topics": [ "groupDates" ] }, { "page": "groupIndices", "title": "groupIndices: group indices", "topics": [ "groupIndices" ] }, { "page": "histKTS", "title": "histKTS: plots histogram", "topics": [ "histKTS" ] }, { "page": "invariantsKTS", "title": "invariantsKTS: invariant plots", "topics": [ "invariantsKTS" ] }, { "page": "isTimeAlright", "title": "isTimeAlright: checks whether a set of dates fits KarsTS format", "topics": [ "isTimeAlright" ] }, { "page": "KarsTS", "title": "KarsTS: launches KarsTS", "topics": [ "KarsTS" ] }, { "page": "laminarityKTS", "title": "laminarityKTS: estimate laminarity", "topics": [ "laminarityKTS" ] }, { "page": "linCorrKTS", "title": "linCorrKTS: linear correlation plot", "topics": [ "linCorrKTS" ] }, { "page": "linearityKTS", "title": "linearityKTS: linearity tests", "topics": [ "linearityKTS" ] }, { "page": "loadAllTypes", "title": "loadAllTypes: load all types of data sets", "topics": [ "loadAllTypes" ] }, { "page": "loadKarsTSFonts", "title": "loadKarsTSFonts: load KarsTS fonts", "topics": [ "loadKarsTSFonts" ] }, { "page": "loessKTS", "title": "loess: loess smoothing", "topics": [ "loessKTS" ] }, { "page": "mainScreen", "title": "mainScreen: launches the main screen", "topics": [ "mainScreen" ] }, { "page": "meanValue", "title": "meanValue: mean value filling", "topics": [ "meanValue" ] }, { "page": "mergeTsOrGap", "title": "mergeTsOrGap: merges time series or gap sets", "topics": [ "mergeTsOrGap" ] }, { "page": "missForestKTS", "title": "missForestKTS: filling missing values with random forest algorithm", "topics": [ "missForestKTS" ] }, { "page": "modeKTS", "title": "modeKTS: computes the mode", "topics": [ "modeKTS" ] }, { "page": "mutInf", "title": "mutInf: mutual information", "topics": [ "mutInf" ] }, { "page": "mutualKTS", "title": "mutualKTS: plots the mutual information", "topics": [ "mutualKTS" ] }, { "page": "myApplyVector", "title": "myApplyVector: apply type function", "topics": [ "myApplyVector" ] }, { "page": "myLinModel", "title": "myLinModel: performs a linear fit", "topics": [ "myLinModel" ] }, { "page": "myScale", "title": "myScale: scaling function", "topics": [ "myScale" ] }, { "page": "naApproxKTS", "title": "naApproxKTS: filling by linear interpolation", "topics": [ "naApproxKTS" ] }, { "page": "NAs4Resamp", "title": "NAs4Resamp: upsamples a time series.", "topics": [ "NAs4Resamp" ] }, { "page": "naSplinesKTS", "title": "naSplinesKTS: filling by spline interpolation", "topics": [ "naSplinesKTS" ] }, { "page": "normalityKTS", "title": "normalityKTS: normality tests", "topics": [ "normalityKTS" ] }, { "page": "packagesToImport", "title": "packagesToImport: packages to import to KarsTS", "topics": [ "packagesToImport" ] }, { "page": "pcaKTS", "title": "pcaKTS: principal 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